Main information

• Ye Xinhai, PhD, Professor （叶昕海 博士）
• College of Advanced Agriculture Science, Zhejiang A&F University
• yexinhai@zafu.edu.cn

Brief introduction

叶昕海，2021年获浙江大学博士学位，2023年浙江大学计算机科学与技术博士后出站，同年起担任浙江农林大学现代农学院教授。2020-2021年曾赴美国罗切斯特大学进行博士生联合培养。主要从事昆虫基因组演化与生物信息学相关研究工作，研究方向主要聚焦于昆虫基因组多样性演化、寄生蜂寄生因子演化与功能及其在害虫生物防治中的应用、以及人工智能与基因组学交叉研究。以第一作者或通讯作者（含共同）在Nature Communications、Genome Research、Molecular Biology and Evolution、BMC Biology、Briefings in Bioinformatics、PLoS Genetics、《环境昆虫学报》等国内外知名期刊发表论文14篇。

入选第八届中国科协青年人才托举工程，主持国家自然科学青年基金项目1项、中国博士后科学基金面上（一等）项目1项。参与国家自然科学基金重点项目、国家重点研发计划项目等2项。担任Journal of Integrative Agriculture杂志青年编委、Frontiers in Genetics杂志审稿编委、《应用昆虫学报》青年编委。长期担任Molecular Biology and Evolution、Insect Science等相关专业领域学术期刊的同行评议专家。多次参与中国昆虫学会学术年会、中国植物保护学会青年科学家沙龙、植被病虫害遥感大会等国内外重要学术会议并作报告。

Education

• 2017.09-2021.06 Ph.D student (Institute of Insect Sciences), College of Agriculture and Biotechnology, Zhejiang University, China. Advised by Prof. Fei Li
• 2020.01-2021.01 Visiting Ph.D student, Department of Biology, University of Rochester, Rochester, NY, USA. Advised by Prof. John H. Werren (China Scholarship Council, CSC program)
• 2016.09-2017.06 Master student (Institute of Insect Sciences), College of Agriculture and Biotechnology, Zhejiang University, China. Advised by Prof. Yunlong Yu and Prof. Fei Li
• 2012.09-2016.06 B.A.(Agr.)(College of Agriculture), B.A. (Art)(College of Foreign Studies), South China Agriculture University, Guangzhou, China. Advised by Prof. Zaifu Xu

Work experience

• 2021.07-2023.10 Postdoctoral fellow, College of Computer Science and Technology/Shanghai Institute for Advanced Study, Zhejiang University, China. co-advisor by Prof. Fei Wu.
• 2023.11-Now Professor, College of Advanced Agriculture Science, Zhejiang A&F University, China.

Areas of research interest

• Insect genomics, parasitoid wasp genomics
• The evolution and function of pest control factors of natural enemies (e.g. parasitoid wasps) and their applications in biological control
• Venom evolution
• AI for genomics
• Bioinformatics

Publications

For more detailed information see my google citations page

# co-first author, * Corresponding author

Select publications:

1. Ye Xinhai, He Chun, Yang Yi, Sun Yu H., Xiong Shijiao, Chan Kevin C., Si Yuxuan, Xiao Shan, Zhao Xianxin, Lin Haiwei, Mei Yang, Yao Yufeng, Ye Gongyin, Wu Fei, Fang Qi. Comprehensive isoform-level analysis reveals the contribution of alternative isoforms to venom evolution and repertoire diversity. *Genome Research, 2023, 33(9):1554-1567. doi: 10.1101/gr.277707.123
2. Ye Xinhai#(#co-first author), Yang Yi#, Zhao Can#, Xiao Shan, Sun Yu H., He Chun, Xiong Shijiao, Zhao Xianxin, Zhang Bo, Lin Haiwei, Shi Jiamin, Mei Yang, Xu Hongxing, Fang Qi, Wu Fei, Li Dunsong, Ye Gongyin. Genomic signatures associated with maintenance of genome stability and venom turnover in two parasitoid wasps. Nature Communications, 2022, 13(1):6417. doi: 10.1038/s41467-022-34202-y
3. Xu Hongxing#, Ye Xinhai#(#co-first author), Yang Yajun, Yang Yi, Sun Yu H., Mei Yang, Xiong Shijiao, He Kang, Xu Le, Fang Qi, Li Fei, Ye Gongyin, Lu Zhongxian. Comparative genomics sheds light on the convergent evolution of miniaturized wasps. *Molecular Biology and Evolution, 2021, 38(12): 5539–5554, doi: 10.1093/molbev/msab273
4. He Chun, Ye Xinhai, Yang Yi, Hu Liya, Si Yuxuan, Zhao Xianxin, Chen Longfei, Fang Qi, Wei Ying, Wu Fei, Ye Gongyin. DeepAlgPro: an interpretable deep neural network model for predicting allergenic proteins. *Briefings in Bioinformatics, 2023, 24(4):bbad246. doi: 10.1093/bib/bbad246
5. Ye Xinhai #(#co-first author), Xiong Shijiao#, Teng Ziwen, Yang Yi, Wang Jiale, Yu Kaili, Wu Huizi, Mei Yang, Xue Cheng, Yan Zhichao, Yin Chuanlin, Wang Fang, Yao Hongwei, Fang Qi, Song Qisheng, Ye Gongyin, Li Fei. Genome of the parasitoid wasp Cotesia chilonis sheds light on amino acid resource exploitation. BMC Biology, 2022, 20(1):118. doi: 10.1186/s12915-022-01313-3
6. Yang Yi#, Ye Xinhai#(#co-first author), Dang Cong, Cao Yunsheng, Hong Rui, Sun Yu H., Xiao Shan, Mei Yang, Xu Le, Fang Qi, Xiao Huamei, Li Fei, Ye Gongyin. Genome of the pincer wasp *Gonatopus flavifemur reveals unique venom evolution and a dual adaptation to parasitism and predation. BMC Biology, 2021, 19(1):145. doi: 10.1186/s12915-021-01081-6
7. Ye Xinhai#(#co-first author), Yan Zhichao#, Yang Yi#, Xiao Shan, Chen Longfei, Wang Jiale, Wang Fei, Xiong Shijiao, Mei Yang, Wang Fang, Yao Hongwei, Song Qisheng, Li Fei, Fang Qi, Werren John H.*, Ye Gongyin. A chromosome‐level genome assembly of the parasitoid wasp Pteromalus puparum. Molecular Ecology Resources, 2020, 20(5):1384–1402. doi: 10.1111/1755-0998.13206
8. Xiao Huamei#*, Ye Xinhai#(#co-first author), Xu Hongxing#, Mei Yang#, Yang Yi, Chen Xi, Yang Yajun, Liu Tao, Yu Yongyi, Yang Weifei, Lu Zhongxian, Li Fei. The genetic adaptations of fall armyworm Spodoptera frugiperda facilitated its rapid global dispersal and invasion. Molecular Ecology Resources, 2020, 20(4):1050–1068. doi: 10.1111/1755‐0998.13182
9. Ye Xinhai#(#co-first author), Xu Le#, Li Xiang#, He Kang#, Hua Hongxia, Cao Zhenghong, Xu Jiadan, Ye Wanyi, Zhang Jiao, Yuan Zhuting, Li Fei. miR-34 modulates wing polyphenism in planthopper. *PLOS Genetics, 2019, 15(6):e1008235. doi: 10.1371/journal.pgen.1008235

All publications:

2024

1. (N45) Zhang Bo, Chen Longfei, Xiao Shan, Dong Cong, Wang Fang, Fang Qi, Ye Xinhai, Stanley David W., Ye Gongyin. iSalivaomicDB: A comprehensive saliva omics database for insects, Insect Science, 2024. (in press). doi: 10.1111/1744-7917.13349
2. (N44) Bai Xue, Yu Kaili, Xiong Shijiao, Chen Jin, Yang Yi, Ye Xinhai, Yao Hongwei, Wang Fang, Fang Qi, Song Qisheng, Ye Gongyin. CRISPR/Cas9-mediated mutagenesis of the white gene in an ectoparasitic wasp, *Habrobracon hebetor. Pest Management Science, 2024, 80(3):1219-1227. doi: 10.1002/ps.7851
3. (N43) Yu Yemin, Yuan Luotian, Wei Ying, Gao Hanyu, Ye Xinhai, Wang Zhihua, Wu Fei. RetroOOD: Understanding Out-of-Distribution Generalization in Retrosynthesis Prediction, AAAI, 2024.(Conference Papers).

2023

1. (N42) Xiong Shijiao, Yu Kaili, Lin Haiwei, Ye Xinhai, Xiao Shan, Yang Yi, Stanley David W., Song Qisheng, Fang Qi, Ye Gongyin. Regulatory network in heat stress response in parasitoid wasp focusing on *Xap5 Heat Stress Regulator. IScience, 2023, 27(1):108622. doi: 10.1016/j.isci.2023.108622
2. (N41) Chen Xu, Chen Yongming, Wang Su, Ye Xinhai, Chen Mengyao, Zang Liansheng. A chromosome-level genome assembly of *Caligula japonica as a resource for evolutionary studies in Lepidoptera. Entomologia Generalis, 2023 (in press). doi: 10.1127/entomologia/2023/2004
3. (N40) Ye Xinhai, HeChun, Yang Yi, Sun Yu H., Xiong Shijiao, Chan Kevin C., Si Yuxuan, Xiao Shan, Zhao Xianxin, Lin Haiwei, Mei Yang, Yao Yufeng, Ye Gongyin, Wu Fei, Fang Qi. Comprehensive isoform-level analysis reveals the contribution of alternative isoforms to venom evolution and repertoire diversity. *Genome Research, 2023, 33(9):1554-1567. doi: 10.1101/gr.277707.123
4. (N39) Hu Liya, Si Yuxuan, Chen Jingyuan, Ye Xinhai, Wang Zhihua, Wu Fei. Attention-based RNA secondary structure prediction. CAAI International Conference on Artificial Intelligence (CICAI), 2023. (Conference Papers).
5. (N38) He Chun, Ye Xinhai, Yang Yi, Hu Liya, Si Yuxuan, Zhao Xianxin, Chen Longfei, Fang Qi, Wei Ying, Wu Fei, Ye Gongyin. DeepAlgPro: an interpretable deep neural network model for predicting allergenic proteins. *Briefings in Bioinformatics, 2023, 24(4):bbad246. doi: 10.1093/bib/bbad246
6. (N37) Yuan Bo, Yang Yi, Yan Zhichao, He Chun, Sun Yu H., Wang Fei, Wang Beibei, Shi Jiamin, Xiao Shan, Wang Fang, Fang Qi, Li Fei, Ye Xinhai, Ye Gongyin. A rapidly evolving single copy histone H1 variant is associated with male fertility in a parasitoid wasp. *Frontiers in Cell and Developmental Biology, 2023, 11:1166517. doi: 10.3389/fcell.2023.1166517
7. (N36) Yu Kaili, Chen Jin, Bai Xue, Xiong Shijiao, Ye Xinhai, Yang Yi, Yao Hongwei, Wang Fang, Fang Qi, Song Qisheng, Ye Gongyin. Multi-omic identification of venom proteins collected from artificial hosts of a parasitoid wasp. *Toxins, 2023, 15(6):377. doi: 10.3390/toxins15060377
8. (N35) Xu Jiadan, Li Bo, Jiang Zhimin, Wang Weimin, Yang Yi, Yang Maofa, Ye Xinhai. Genomic analyses provide insights into the genome evolution and environmental adaptation of the tobacco moth *Ephestia elutella. Frontiers in Physiology, 2023, 14:1187522. doi: 10.3389/fphys.2023.1187522
9. (N34) Xiao Shan, Ye Xinhai, Wang Shuping, Yang Yi, Fang Qi, Wang Fang, Ye Gongyin. Genome assembly of the ectoparasitoid wasp *Theocolax elegans. Scientific Data, 2023, 10(1):159. doi: 10.1038/s41597-023-02067-5

2022

1. (N33) Ye Xinhai #(#co-first author), Yang Yi#, Zhao Can#, Xiao Shan, Sun Yu H., He Chun, Xiong Shijiao, Zhao Xianxin, Zhang Bo, Lin Haiwei, Shi Jiamin, Mei Yang, Xu Hongxing, Fang Qi, Wu Fei, Li Dunsong, Ye Gongyin. Genomic signatures associated with maintenance of genome stability and venom turnover in two parasitoid wasps. Nature Communications, 2022, 13(1):6417. doi: 10.1038/s41467-022-34202-y
2. (N32) Cong Yuyang, Ye Xinhai, Mei Yang, He Kang, Li Fei. Transposons and non-coding regions drive the intrafamily differences of genome size in insects. *IScience, 2022, 25(9):104873. doi: 10.1016/j.isci.2022.104873
3. (N31) Ye Xinhai #(#co-first author), Xiong Shijiao#, Teng Ziwen, Yang Yi, Wang Jiale, Yu Kaili, Wu Huizi, Mei Yang, Xue Cheng, Yan Zhichao, Yin Chuanlin, Wang Fang, Yao Hongwei, Fang Qi, Song Qisheng, Ye Gongyin, Li Fei. Genome of the parasitoid wasp Cotesia chilonis sheds light on amino acid resource exploitation. BMC Biology, 2022, 20(1):118. doi: 10.1186/s12915-022-01313-3
4. (N30) Mei Yang, Jing Dong, Tang Shenyang, Chen Xi, Chen Hao, Duanmu Haonan, Cong Yuyang, Chen Mengyao, Ye Xinhai, Zhou Hang, He Kang, Li Fei. InsectBase 2.0: a comprehensive gene resource for insects. *Nucleic Acids Research, 2022, 50(D1):D1040-D1045. doi: 10.1093/nar/gkab1090
5. (N29) Chen Longfei, Lang Kun, Zhang Bo, Shi Jiamin, Ye Xinhai, Stanley David W., Fang Qi, Ye Gongyin. iVenomDB: a manually curated database for insect venom proteins. *Insect Science, 2022, 30(1):264-266. doi: 10.1111/1744-7917.13054
6. (N28) Xu Hongxing#, Zhao Xianxin#, Yang Yajun, Chen Xi, Mei Yang, He Kang, Xu Le, Ye Xinhai, Liu Ying, Li Fei, Lu Zhongxian. Chromosome-level genome assembly of an agricultural pest, the rice leaffolder *Cnaphalocrocis exigua (Crambidae, Lepidoptera). Molecular Ecology Resources, 2022, 22(1):307-318. doi: 10.1111/1755-0998.13461
7. (N27) Ma Weihua, Wu Tong, Zhang Zan, Li Hang, Situ Gongming, Yin Chuanlin, Ye Xinhai, Chen Mengyao, Zhao Xianxin, He Kang, Li Fei. Using transcriptome shannon entropy to evaluate the off-target effects and safety of insecticidal siRNAs. *Journal of Integrative Agriculture, 2022, 21(1):170-177. doi: 10.1016/S2095-3119(20)63394-9 (Cover Story)
8. (N26) Huo, J.L., Zhang, L.Q., Zhang, X., Wu, X.W., Ye, Xinhai, Sun, Y.H., Cheng, W.M., Yang, K., Pan, W.R. and Zeng, Y.Z. Genome-wide single nucleotide polymorphism array and whole-genome sequencing reveal the inbreeding progression of Banna minipig inbred line. Animal Genetics, 2022, 53(1):146-151. doi: 10.1111/age.13149
9. (N25) Jiang Yinjie, Chen Zhengyu, Kuang Kun, Yuan Luotian, Ye Xinhai, Wang Zhihua, Wu Fei, Wei Ying. The Role of Deconfounding in Meta-learning, *39th International Conference on Machine Learning (ICML), 2022. (Conference Papers).
10. (N24) Cheng Ziqi, Li Jiaqi, Ye Xinhai, Li Fei, He Kang. Comparative analysis of the draft genome of two sibling tea geometrids, *Ectropis grisescens and Ectropis obliqua (in Chinese). Chinese Journal of Applied Entomology, 2022, 59(4):726-740. 程梓淇, 李佳琦, 叶昕海, 李飞, 贺康*. 两种茶尺蠖近缘种基因组草图比较分析. 应用昆虫学报, 2022, (004): 059.

2021

1. (N23) Xu Hongxing#, Ye Xinhai #(#co-first author), Yang Yajun, Yang Yi, Sun Yu H., Mei Yang, Xiong Shijiao, He Kang, Xu Le, Fang Qi, Li Fei, Ye Gongyin, Lu Zhongxian. Comparative genomics sheds light on the convergent evolution of miniaturized wasps. *Molecular Biology and Evolution, 2021, 38(12):5539–5554, doi: 10.1093/molbev/msab273. (Cover Highlight)
2. (N22) Yang Yi#, Ye Xinhai #(#co-first author), Dang Cong, Cao Yunshen, Hong Rui, Sun Yu H., Xiao Shan, Mei Yang, Xu Le, Fang Qi, Xiao Huamei, Li Fei, Ye Gongyin. Genome of the pincer wasp *Gonatopus flavifemur reveals unique venom evolution and a dual adaptation to parasitism and predation. BMC Biology, 2021, 19(1):145. doi: 10.1186/s12915-021-01081-6
3. (N21) Zhao Xianxin#, Xu Hongxing#, He Kang, Shi Zhenmin, Chen Xi, Ye Xinhai, Mei Yang, Yang Yajun, Li Meizhen, Gao Libin, Xu Le, Xiao Huamei, Liu Ying, Lu Zhongxian, Li Fei. A chromosome-level genome assembly of rice leaffolder, *Cnaphalocrocis medinalis. Molecular Ecology Resources, 2021; 21(2):561-572. doi: 10.1111/1755-0998.13274
4. (N20) Teng Ziwen, Wu Huizi, Ye Xinhai, Fang Qi, Zhou Hongxu, Ye Gongyin. An endoparasitoid uses its egg surface proteins to regulate its host immune response. Insect Science, 2021, 29(4):1030-1046. doi: 10.1111/1744-7917.12978

2020

1. (Preprint) Ye Xinhai, Yang Yi, Tian Zhaoyang, Xu Le, Yu Kaili, Xiao Shan, Yin Chuanlin, Xiong Shijiao, Fang Qi, Chen Hu, Li Fei, Ye Gongyin. A high-quality *de novo genome assembly from a single parasitoid wasp. bioRxiv, 2020, 2020.07.13.200725 I do not have plan to submit it to a peer-reviewed journal in the near future.
2. (N19) Ye Xinhai #(#co-first author), Yan Zhichao#, Yang Yi#, Xiao Shan, Chen Longfei, Wang Jiale, Wang Fei, Xiong Shijiao, Mei Yang, Wang Fang, Yao Hongwei, Song Qisheng, Li Fei, Fang Qi, Werren John H.*, Ye Gongyin. A chromosome‐level genome assembly of the parasitoid wasp Pteromalus puparum. Molecular Ecology Resources, 2020, 20(5):1384–1402. doi: 10.1111/1755-0998.13206
3. (N18) Xiao Huamei#*, Ye Xinhai #(#co-first author), Xu Hongxing#, Mei Yang#, Yang Yi, Chen Xi, Yang Yajun, Liu Tao, Yu Yongyi, Yang Weifei, Lu Zhongxian, Li Fei. The genetic adaptations of fall armyworm Spodoptera frugiperda facilitated its rapid global dispersal and invasion. Molecular Ecology Resources, 2020, 20(4):1050-1068. doi: 10.1111/1755‐0998.13182 (Top cited article of Molecular Ecology Resources in 2021)
4. (N17) Yu Kaili#, Xiong Shijiao#, Xu Gang, Ye Xinhai, Yao Hongwei, Wang Fang, Fang Qi, Song Qisheng, Ye Gongyin. Identification of neuropeptides and their receptors in the ectoparasitoid, *Habrobracon hebetor. Frontiers in Physiology, 2020, 11: 575655. doi: 10.3389/fphys.2020.575655

2019

1. (N16) Ye Xinhai #(#co-first author), Xu Le#, Li Xiang#, He Kang#, Hua Hongxia, Cao Zhenghong, Xu Jiadan, Ye Wanyi, Zhang Jiao, Yuan Zhuting, Li Fei. miR-34 modulates wing polyphenism in planthopper. *PLOS Genetics, 2019, 15(6):e1008235. doi: 10.1371/journal.pgen.1008235 (Homepage Highlight)
2. (N15) Teng Ziwen, Wu Huizi, Ye Xinhai, Xiong Shijiao, Xu Gang, Wang Fang, Fang Qi, and Ye Gongyin. An ovarian protein involved in passive avoidance of an endoparasitoid to evade its host immune response. *Journal of Proteome Research, 2019, 18(7):2695-2705. doi: 10.1021/acs.jproteome.8b00824
3. (N14) Chen Mengyao, Ye Wanyi, Xiao Huamei, Li Meizhen, Cao Zhenghong, Ye Xinhai, Zhao Xianxin, He Kang, Li Fei. lncRNAs are potentially involved in the immune interaction between small brown planthopper and rice stipe virus. *Journal of Integrative Agriculture, 2019, 18(12):2814-2822. doi: 10.1016/S2095-3119(19)62569-4
4. (N13) Yin Chuanlin, Ye Xinhai, Chen Mengyao, Mei Yang, Xiao Huamei, Li Fei. Evolution analysis of cytochrome P450 gene families in parasitoid wasps (in Chinese). *Chinese Journal of Biological Control, 2019, 35(3): 335-342. 尹传林, 叶昕海, 陈梦瑶, 梅洋, 肖花美, 李飞*. 寄生蜂细胞色素P450基因家族进化分析. 中国生物防治学报, 2019, 35(3):335–342.
5. (N12) Ye Xinhai, Yang Yi, Mei Yang, Xiao Huamei, Li Fei. The genome annotation and comparative genomics analysis of *Spodoptera frugiperda. Journal of Environmental Entomology, 2019, 41(4), 706–717. 叶昕海, 杨义, 梅洋, 肖花美*, 李飞. 草地贪夜蛾基因组注释与分析. 环境昆虫学报, 2019, 41(4):706–717.（入选中国知网学术精要32篇高下载论文）
6. (N11) Liu Ying, Xiao Huamei, Mei Yang, Yang Yi, Ye Xinhai, Chen Andong, Li Fei. Evolutionary analysis of chemoreception related gene families of *Spodoptera frugiperda (in Chinese). Journal of Environmental Entomology, 2019, 41(4), 718-726. 刘莹, 肖花美, 梅洋, 杨义, 叶昕海, 谌爱东, 李飞*. 草地贪夜蛾化学感受相关基因家族的进化分析. 环境昆虫学报, 2019, 41(4):718–726.
7. (N10) Mei Yang, Yang Yi, Ye Xinhai, Xiao Huamei, Li Fei. Evolutionary analysis of detoxification gene families of *Spodoptera frugiperda (in Chinese). Journal of Environmental Entomology, 2019, 41(4), 727-735. 梅洋, 杨义, 叶昕海, 肖花美, 李飞*. 草地贪夜蛾解毒代谢相关基因家族的进化分析. 环境昆虫学报, 2019, 41(4):727–735.
8. (N9) Wang Jiale, Jin Hongxia, Yang Lei, Ye Xinhai, Xiao Shan, Song Qisheng, Stanley David W., Ye Gongyin, Fang Qi. Genome‐wide identification and analysis of genes encoding cuticular proteins in the endoparasitoid wasp *Pteromalus puparum (Hymenoptera: Pteromalidae). Archives of Insect Biochemistry and Physiology, 2019, 103(2):e21628. doi: 10.1002/arch.21628
9. (N8) Xiao Shan, Wang Beibei, Li Kai, Xiong Shijiao, Ye Xinhai, Wang Jiale, Zhang Jiao, Yan Zhichao, Wang Fang, Song Qisheng, Stanley David W., Ye Gongyin, Fang Qi. Identification and characterization of miRNAs in an endoparasitoid wasp, *Pteromalus puparum. Archives of Insect Biochemistry and Physiology, 2019, 103(2):e21633. doi: 10.1002/arch.21633
10. (N7) Xiong Shijiao, Yu Kaili, Ye Xinhai, Fang Qi, Deng Yi, Xiao Shan, Yang Lei, Wang Beibei, Wang Fei, Yan Zhichao, Wang Fang, Song Qisheng, Stanley David W., Ye Gongyin. Genes acting in longevity‐related pathways in the endoparasitoid, *Pteromalus puparum. Archives of Insect Biochemistry and Physiology, 2019, 103(2):e21635. doi: 10.1002/arch.21635

2018

1. (N6) Chen Longfei, Lang Kun, Bi Shoudong, Luo Jiapeng, Liu Feiling, Ye Xinhai, Xu Jiadan, He Kang, Li Fei, Ye Gongyin, Chen Xuexin. WaspBase: a genomic resource for the interactions among parasitic wasps, insect hosts and plants. Database, 2018, 1-9.

2017

1. (N5) Ye Xinhai #(#co-first author), Yang Liwen#, Stanley David W., Li Fei, Fang Qi. Two Bombyx mori acetylcholinesterase genes influence motor control and development in different ways. Scientific Reports, 2017,7(1):4985.
2. (N4) Ye Xinhai, van Achterberg Cornelis, Yue Qi, Xu Zaifu. A review of the Chinese Leucospidae (Hymenoptera, Chalcidoidea). *Zookeys, 2017, 651:107-157.
3. (N3) Yan Zhichao, Ye Xinhai, Wang Beibei, Fang Qi, Ye Gongyin. Research advances on composition, function and evolution of venom proteins in parasitoid wasps (in Chinese). Chinese Journal of Biological Control, 2017, 33(1):1-10. 严智超, 叶昕海, 王蓓蓓, 方琦, 叶恭银. 寄生蜂毒液蛋白组成、功能及进化的研究进展. 中国生物防治学报, 2017, 33(1): 1–10.

2016

1. (N2) Fang Qi, Wang Beibei, Ye Xinhai, Wang Fei, Ye Gongyin. Venom of parasitoid *Pteromalus puparum impairs host humoral antimicrobial activity by decreasing host cecropin and lysozyme gene expression. Toxins, 2016, 8(2):52.

2015

1. (N1) Zhu Yu, Ye Xinhai, Liu Yang, Yan Zhichao, Stanley David W., Ye Gongyin, Fang Qi. A venom gland extracellular chitin binding-like protein from pupal endoparasitoid wasps, *Pteromalus puparum, selectively binds chitin. Toxins, 2015, 7(12):5098-5113.

Honors & awards

• 2020.10 Chu Kochen Scholarship, Zhejiang University, China
• 2018.12 “Academic Star” Program for Ph.D Student in Zhejiang University, Zhejiang University, China
• 2019.06 Chinese Government Scholarship from China Scholarship Council (CSC) , Zhejiang University, China
• 2018.11 Tang Lixin Scholarship, Zhejiang University, China
• 2017.10 National Scholarship for Doctoral Students, Zhejiang University, China
• 2018.11 Excellent Individuals in Social Practice of Zhejiang University, Zhejiang University, China
• 2019.07 Best Student Oral Presentation in the 4th International Conference of Insect Genomics (ICIG) and 7th International Symposium on Insect Physiology, Biochemistry and Molecular Biology (IPBMB), Chongqing, China
• 2018.08 The First Prize for Oral Presentation in 2018 Annual Academic Conference of Chinese Society for Insects, Chengdu, China
• 2017.10 The Second Prize for Oral Presentation in 2017 Annual Academic Conference of Chinese Society for Insects, Xiamen, China
• 2017.07 Best poster in the 3rd International Conference of Insect Genomics (ICIG) and 6th International Symposium on Insect Physiology, Biochemistry and Molecular Biology (IPBMB), Hangzhou, China

Grant

• The Program of National Natural Science Foundation of China (NSFC) (32202376), 2023-2025, 300,000 RMB.
• The Young Elite Scientists Sponsorship Program by China Association for Science and Technology (2022QNRC001), 2022-2024, 300,000 RMB.
• The China Postdoctoral Science Foundation (2021M700125), 2022-2023, 120,000 RMB.
• “Academic Star” Program for Ph.D Student in Zhejiang University (2018-2020), 40,000 RMB.

Talk

• 寄生蜂比较基因组与毒液演化研究（浙江省生物信息学会年会，2023年12月28日，浙江杭州）
• 寄生蜂比较基因组与毒液快速演化的机制（内蒙古农业大学植物保护学科学术论坛，2023年11月11日，线上，特邀报告）
• 寄生蜂比较基因组与毒液快速演化的机制（格物致知创新前沿论坛，2023年11月8日，线上，特邀报告）
• 寄生蜂毒液组分多样化与其快速演化的新机制（希望组“组而论道”学术论坛，2023年10月23日，线上，特邀报告）
• 寄生蜂基因组和毒液演化（中国农业科学院深圳农业基因组研究所生态基因组研究中心学术研讨会议，2023年9月19日，广东深圳，特邀报告）
• 寄生蜂基因组与毒液演化（第四届植被病虫害遥感大会，2023年8月19日，内蒙古呼和浩特）
• 寄生蜂基因组与毒液演化（中国植物保护学会青年科学家沙龙暨青托论坛，2023年6月19日，重庆，特邀报告）
• 寄生蜂基因组与毒液演化（中国昆虫学会第十一届昆虫生理生化与分子生物学专业委员会2023年学术研讨会，2023年6月16日，广东广州）
• 寄生蜂基因组与毒液演化（第一届长三角生物信息学大会，2023年4月16日，浙江湖州，特邀报告）
• 寄生蜂的基因组进化和毒液快速演变（2022年全国害虫生物防治学术研讨会，2022年12月24日，线上）
• Genome evolution and venom turnover of parasitoid wasps（International Symposium on China-Latin America Biological Control，2022年12月15日，线上，主旨报告）
• 深度学习在研究生物序列数据隐含知识中的作用（浙江大学何志均先生学术论坛第四期，2022年10月15日，线上）
• 寄生蜂的基因组研究（浙江大学博士后学术沙龙，2022年9月27日，浙江杭州）
• 若干寄生蜂的基因组研究（中国昆虫学会2021年学术年会，2021年10月15日，陕西西安）
• 水稻寄生蜂基因组研究（水稻生物学国家重点实验室第二期青年学术论坛，2021年9月10日，浙江富阳）
• The genome of endoparasitoid Cotesia chilonis (Hymenoptera: Braconidae)（The 4th International Conference of Insect Genomics (ICIG) and the 7th International Symposium on Insect Physiology, Biochemistry and Molecular Biology (IPBMB)，2019年7月4日，重庆）
• miR-34 modulates wing polyphenism in planthopper（中国昆虫学会2019年学术年会，2019年8月29日，广西桂林）
• The genome of endoparasitoid Cotesia chilonis (Hymenoptera: Braconidae)（中国昆虫学会2018年学术年会，2018年8月23日，四川成都）
• 家蚕的两个乙酰胆碱酯酶基因对其行动能力和发育的影响（浙江省昆虫学会第一届青工委研讨会，2017年11月2日，浙江长兴）

Reviewer

Molecular Biology and Evolution, Communications Biology, IScience, Molecular Ecology Resources, BMC Biology, BMC Genomics, G3, Frontiers in Genetics, Frontiers in Veterinary Science, Scientific Reports, PeerJ, Wellcome Open Research, International Journal of Molecular Sciences, Data, Pathogens, Genes, Pest Management Science, Insect Science, Archives of Insect Biochemistry & Physiology, Animal Reproduction, GigaScience, Genomics Proteomics & Bioinformatics

Editorial Board

• Journal of Integrative Agriculture (JIA), Youth Editorial Board, 2023-present
• Frontiers in Genetics, Review Editor in Livestock Genomics, 2020-present
• Frontiers in Veterinary Science, Review Editor in Livestock Genomics, 2020-present
• Chinese Journal of Applied Entomology 《应用昆虫学报》, Youth Editorial Board, 2024-present